Variant report

Variant	rs31037
Chromosome Location	chr5:146615785-146615786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10875620	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11167971	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11167973	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11167981	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1155945	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1368283	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1978705	0.81[ASN][1000 genomes]
rs2895680	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs31036	0.97[ASN][1000 genomes]
rs4705030	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4705137	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6890102	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7736308	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9687216	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9687343	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146613400-146616000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr5:146613600-146616000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:146614400-146615800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:146614400-146617800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:146614800-146617800	Weak transcription	Gastric	stomach
6	chr5:146615000-146617800	Weak transcription	Pancreas	Pancrea
7	chr5:146615000-146618400	Weak transcription	Esophagus	oesophagus
8	chr5:146615000-146620800	Weak transcription	Psoas Muscle	Psoas
9	chr5:146615000-146621600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:146615200-146615800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr5:146615200-146615800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:146615200-146621400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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