Variant report

Variant	rs3107239
Chromosome Location	chr11:45988236-45988237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45937002..45939512-chr11:45985947..45988260,2	MCF-7	breast:
2	chr11:45987934..45989618-chr11:46004381..46006271,2	K562	blood:

Variant related genes	Relation type
ENSG00000121680	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2860376	0.82[AFR][1000 genomes]
rs2860433	0.81[AFR][1000 genomes]
rs2945998	0.80[AFR][1000 genomes]
rs2946000	0.80[AFR][1000 genomes]
rs2946002	0.84[AFR][1000 genomes]
rs2946005	0.81[AFR][1000 genomes]
rs2959095	0.81[AFR][1000 genomes]
rs2959097	0.80[AFR][1000 genomes]
rs4756043	0.82[AFR][1000 genomes]
rs7934681	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45952400-45996200	Weak transcription	Stomach Mucosa	stomach
2	chr11:45953000-45988600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45957200-46004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:45957200-46004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:45970800-45989200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:45970800-45990400	Weak transcription	NHDF-Ad	bronchial
8	chr11:45971000-45990000	Weak transcription	Colonic Mucosa	Colon
9	chr11:45971000-45990600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:45971000-45992400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:45971200-45989600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:45971200-45992400	Weak transcription	Small Intestine	intestine
13	chr11:45971400-45990800	Weak transcription	HUVEC	blood vessel
14	chr11:45971800-45991400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:45972000-45989000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:45972200-45992400	Weak transcription	Psoas Muscle	Psoas
17	chr11:45972800-45988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:45975000-45989000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:45975200-45988600	Weak transcription	Brain Substantia Nigra	brain
20	chr11:45975200-45991600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:45975200-45999200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr11:45977000-45992200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:45977200-45989000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:45977600-45988400	Weak transcription	Brain Germinal Matrix	brain
25	chr11:45977600-45989000	Weak transcription	Spleen	Spleen
26	chr11:45980200-45995600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:45981000-45989800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:45981200-45993000	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:45981400-45993400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:45981400-45995000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:45981800-45993400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:45982200-46002200	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:45982600-45993200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr11:45983000-45994000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:45983000-46002200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr11:45983200-45993000	Strong transcription	Fetal Intestine Large	intestine
37	chr11:45983200-45993000	Strong transcription	Fetal Stomach	stomach
38	chr11:45983200-45993600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:45983200-45993600	Strong transcription	Thymus	Thymus
40	chr11:45983600-45991400	Strong transcription	Fetal Intestine Small	intestine
41	chr11:45983600-45993000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:45983800-45989200	Weak transcription	Right Ventricle	heart
43	chr11:45983800-45989200	Weak transcription	HSMM	muscle
44	chr11:45984000-45988400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:45984000-45989000	Weak transcription	Brain Angular Gyrus	brain
46	chr11:45984000-45989000	Weak transcription	Fetal Kidney	kidney
47	chr11:45984000-45990000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:45984000-45990800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr11:45984000-45993200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:45984000-45995000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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