Variant report

Variant	rs3109487
Chromosome Location	chr4:134021115-134021116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2714092	1.00[AFR][1000 genomes]
rs2714121	1.00[AMR][1000 genomes]
rs2719022	1.00[AFR][1000 genomes]
rs2719026	1.00[AFR][1000 genomes]
rs2719035	1.00[AFR][1000 genomes]
rs2719038	1.00[AFR][1000 genomes]
rs2953827	1.00[AFR][1000 genomes]
rs2968723	1.00[AFR][1000 genomes]
rs2968724	0.92[AFR][1000 genomes]
rs3111714	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019110	chr4:133717769-134026923	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830072	chr4:133923695-134047582	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:134018400-134023600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:134018800-134023600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:134021000-134023200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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