Variant report

Variant	rs3112498
Chromosome Location	chr3:59844264-59844265
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1485725	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1485726	0.89[EUR][1000 genomes]
rs1485729	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs1485733	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2629896	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs2687903	0.99[EUR][1000 genomes]
rs615964	0.94[EUR][1000 genomes]
rs621666	0.85[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs669229	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs670885	0.96[EUR][1000 genomes]
rs677703	0.87[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs678981	0.87[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs687342	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv460564	chr3:59821071-59927727	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv590384	chr3:59821071-59927727	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv460565	chr3:59842644-59877988	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv470616	chr3:59842644-59877988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv590385	chr3:59842644-59877988	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59834000-59848000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr3:59843000-59844600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr3:59843600-59845000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:59843600-59853200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:59843600-59853200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:59843600-59854200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:59843800-59846800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:59843800-59848000	Weak transcription	Dnd41	blood
9	chr3:59843800-59852800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:59844000-59848400	Weak transcription	Primary T cells from cord blood	blood
11	chr3:59844200-59844400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:59844200-59844400	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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