Variant report

Variant	rs3113389
Chromosome Location	chr4:124766080-124766081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1433211	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2163876	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3097903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3097908	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3097936	0.82[ASN][1000 genomes]
rs3097938	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3097940	0.94[ASW][hapmap];0.81[CEU][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3113388	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113390	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113392	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3113393	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3113396	0.82[LWK][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2754745	chr4:124698055-124770865	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124752400-124769000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:124758400-124769000	Weak transcription	Left Ventricle	heart
3	chr4:124763000-124771000	Weak transcription	Aorta	Aorta
4	chr4:124764200-124770400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:124764400-124770400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:124764600-124769800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:124765200-124768400	Weak transcription	NHDF-Ad	bronchial
8	chr4:124765200-124770200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:124765400-124766200	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr4:124766000-124769000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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