Variant report

Variant	rs3115913
Chromosome Location	chr8:94952580-94952581
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDH17-4	chr8:94952330-94952920	NONHSAT127761

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs3115905	1.00[CHB][hapmap]
rs3115906	1.00[CHB][hapmap]
rs3115909	1.00[CHB][hapmap]
rs3115910	1.00[CHB][hapmap]
rs3115914	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3115915	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3115916	1.00[AMR][1000 genomes]
rs3115917	0.87[AMR][1000 genomes]
rs3115918	0.96[AMR][1000 genomes]
rs3115919	0.96[AMR][1000 genomes]
rs3115920	0.87[AMR][1000 genomes]
rs3115921	0.87[AMR][1000 genomes]
rs3133978	1.00[CHB][hapmap]
rs3133980	1.00[CHB][hapmap]
rs3133983	1.00[CHB][hapmap]
rs3133985	1.00[CHB][hapmap]
rs3133986	0.87[AMR][1000 genomes]
rs6983462	1.00[AMR][1000 genomes]
rs6997830	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs723039	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94948200-94956600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:94948400-94956400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:94948800-94952800	Weak transcription	HSMMtube	muscle
4	chr8:94948800-94955800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:94948800-94955800	Weak transcription	Ovary	ovary
6	chr8:94948800-94956200	Weak transcription	NHLF	lung
7	chr8:94949000-94954200	Weak transcription	Right Ventricle	heart
8	chr8:94950800-94953800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:94950800-94954000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr8:94951000-94952600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:94951000-94955600	Weak transcription	Psoas Muscle	Psoas
12	chr8:94951200-94955800	Weak transcription	Fetal Heart	heart
13	chr8:94951400-94952600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:94951400-94954000	Weak transcription	Right Atrium	heart
15	chr8:94951400-94954800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr8:94951400-94955400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:94951400-94955400	Weak transcription	Left Ventricle	heart
18	chr8:94951400-94956000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:94951600-94952600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:94951600-94955400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr8:94951800-94952600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
22	chr8:94951800-94952800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:94951800-94955800	Weak transcription	Osteobl	bone
24	chr8:94951800-94956000	Weak transcription	NHDF-Ad	bronchial
25	chr8:94952000-94954200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr8:94952200-94952600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
27	chr8:94952200-94956000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:94952400-94953600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:94952400-94953600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland

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