Variant report

Variant	rs3116462
Chromosome Location	chr8:104296305-104296306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104294096..104296661-chr8:104309183..104312347,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164930	Chromatin interaction
ENSG00000247081	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12541167	0.88[AMR][1000 genomes]
rs12543038	0.88[AMR][1000 genomes]
rs13275377	0.88[AMR][1000 genomes]
rs13278361	0.88[AMR][1000 genomes]
rs1353212	0.88[AMR][1000 genomes]
rs1353213	0.88[AMR][1000 genomes]
rs1403293	0.93[AMR][1000 genomes]
rs1494278	0.88[AMR][1000 genomes]
rs1522707	0.86[AMR][1000 genomes]
rs1522713	0.90[AMR][1000 genomes]
rs1568641	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16870243	0.85[AMR][1000 genomes]
rs16870245	0.85[AMR][1000 genomes]
rs16870249	0.85[AMR][1000 genomes]
rs17205332	0.88[AMR][1000 genomes]
rs1982892	0.88[AMR][1000 genomes]
rs1982893	0.88[AMR][1000 genomes]
rs2131860	0.90[AMR][1000 genomes]
rs2220825	0.88[AMR][1000 genomes]
rs2270525	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3104029	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3104031	0.93[AMR][1000 genomes]
rs3107646	0.81[AMR][1000 genomes]
rs3107648	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3107649	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3116457	0.90[AMR][1000 genomes]
rs3116464	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3116466	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3116468	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3133820	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3133821	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3133824	0.88[AMR][1000 genomes]
rs3133825	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3133830	0.81[ASN][1000 genomes]
rs3133832	0.81[ASN][1000 genomes]
rs34185273	0.88[AMR][1000 genomes]
rs34201011	0.88[AMR][1000 genomes]
rs34273148	0.88[AMR][1000 genomes]
rs34337822	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1015965	chr8:104192086-104361108	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv1017326	chr8:104236193-104313235	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104289200-104302000	Weak transcription	Fetal Heart	heart
2	chr8:104293800-104310000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:104294000-104296800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:104294000-104306000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:104294000-104306000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:104294200-104300000	Weak transcription	NHLF	lung
7	chr8:104294400-104300400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:104294400-104300800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:104294600-104300200	Weak transcription	NHDF-Ad	bronchial
10	chr8:104294800-104299200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:104295200-104300400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:104295200-104300800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:104295400-104305600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:104295800-104300000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:104296000-104297200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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