Variant report

Variant	rs311677
Chromosome Location	chr6:74136427-74136428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs311675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs311680	0.81[ASW][hapmap];1.00[CEU][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6453671	0.85[MEX][hapmap]
rs9360669	0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs311677	MTO1	Cis_1M	lymphoblastoid	RTeQTL
rs311677	C6orf150	cis	multi-tissue	Pritchard

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74119200-74149000	Weak transcription	Fetal Intestine Large	intestine
2	chr6:74123200-74160200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:74124400-74139800	Weak transcription	NHDF-Ad	bronchial
4	chr6:74125400-74160800	Weak transcription	Gastric	stomach
5	chr6:74126400-74137200	Weak transcription	Placenta	Placenta
6	chr6:74126600-74154200	Weak transcription	Thymus	Thymus
7	chr6:74127400-74155800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:74127600-74147000	Weak transcription	HUVEC	blood vessel
9	chr6:74129000-74149200	Weak transcription	Ovary	ovary
10	chr6:74129000-74160600	Weak transcription	HSMMtube	muscle
11	chr6:74129200-74160200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:74129600-74137200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:74129800-74160200	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:74129800-74160200	Weak transcription	NHLF	lung
15	chr6:74130000-74139600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:74130000-74160600	Weak transcription	NHEK	skin
17	chr6:74130200-74159400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:74130200-74160800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:74130400-74150400	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:74130400-74159400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:74130400-74160000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:74130600-74160400	Weak transcription	Esophagus	oesophagus
23	chr6:74130600-74160800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:74131200-74139000	Strong transcription	Fetal Stomach	stomach
25	chr6:74131600-74137200	Weak transcription	Spleen	Spleen
26	chr6:74131800-74137400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:74131800-74145200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:74131800-74151000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:74131800-74160200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:74132000-74143400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:74132200-74137200	Weak transcription	Hela-S3	cervix
32	chr6:74132200-74137600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:74132200-74143600	Weak transcription	Fetal Lung	lung
34	chr6:74132200-74144000	Weak transcription	Aorta	Aorta
35	chr6:74132200-74160400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:74132200-74160400	Weak transcription	Left Ventricle	heart
37	chr6:74132200-74160800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:74132400-74136600	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:74132400-74137200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:74132400-74137400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:74132400-74137400	Weak transcription	A549	lung
42	chr6:74132400-74143000	Weak transcription	HSMM	muscle
43	chr6:74132600-74144000	Weak transcription	Primary T cells from cord blood	blood
44	chr6:74132600-74149400	Weak transcription	Osteobl	bone
45	chr6:74132800-74137400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr6:74132800-74142200	Weak transcription	Lung	lung
47	chr6:74132800-74151600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr6:74132800-74158400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:74133000-74137200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:74133000-74151400	Strong transcription	Primary monocytes fromperipheralblood	blood

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