Variant report

Variant	rs3117324
Chromosome Location	chr6:33324527-33324528
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000228285	Chromatin interaction
ENSG00000204209	Chromatin interaction
ENSG00000231925	Chromatin interaction
ENSG00000236104	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs211454	0.95[ASN][1000 genomes]
rs211467	0.98[ASN][1000 genomes]
rs211476	0.99[ASN][1000 genomes]
rs3106192	0.89[ASN][1000 genomes]
rs3117323	0.82[ASN][1000 genomes]
rs3130008	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3130010	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
3	nsv969386	chr6:33297665-33325116	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3117324	TAPBP	cis	multi-tissue	Pritchard

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33322000-33332200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:33323000-33326200	Enhancers	Stomach Mucosa	stomach
3	chr6:33324000-33324600	Enhancers	Duodenum Mucosa	Duodenum
4	chr6:33324000-33324600	Enhancers	Gastric	stomach
5	chr6:33324000-33326400	Enhancers	K562	blood
6	chr6:33324200-33324600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:33324400-33324600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:33324400-33325000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:33324400-33326200	Enhancers	Fetal Intestine Large	intestine
10	chr6:33324400-33332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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