Variant report

Variant	rs3118026
Chromosome Location	chr1:58191417-58191418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3118017	1.00[EUR][1000 genomes]
rs3118022	1.00[EUR][1000 genomes]
rs3118066	1.00[EUR][1000 genomes]
rs3118068	1.00[EUR][1000 genomes]
rs3126022	1.00[EUR][1000 genomes]
rs3131716	1.00[EUR][1000 genomes]
rs3131721	1.00[EUR][1000 genomes]
rs3131722	1.00[EUR][1000 genomes]
rs7512763	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58189000-58191800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr1:58189600-58192200	Enhancers	Fetal Heart	heart
3	chr1:58190000-58192600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:58190400-58191800	Enhancers	Right Ventricle	heart
5	chr1:58191200-58194800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:58191400-58191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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