Variant report

Variant	rs3118120
Chromosome Location	chr1:150159862-150159863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150158453..150162673-chr1:150163333..150168341,4	K562	blood:
2	chr1:149857369..149865402-chr1:150155748..150164645,14	K562	blood:
3	chr1:150159512..150161245-chr1:150206152..150208697,2	K562	blood:
4	chr1:150145555..150147909-chr1:150159184..150161241,2	K562	blood:
5	chr1:149853460..149855808-chr1:150158235..150161131,2	K562	blood:
6	chr1:150159799..150162773-chr1:150189935..150191531,2	MCF-7	breast:
7	chr1:149855497..149863444-chr1:150156597..150162643,11	K562	blood:
8	chr1:150159276..150160101-chr15:84272402..84272922,2	MCF-7	breast:
9	chr1:150159275..150161312-chr1:150162457..150164642,3	MCF-7	breast:
10	chr1:149858307..149862337-chr1:150158669..150163004,8	MCF-7	breast:
11	chr1:149859724..149860272-chr1:150159251..150160109,2	K562	blood:
12	chr1:150135426..150138893-chr1:150159177..150161472,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2086203	1.00[AMR][1000 genomes]
rs4553237	1.00[AMR][1000 genomes]
rs6688454	1.00[AMR][1000 genomes]
rs6694141	1.00[AMR][1000 genomes]
rs7518711	1.00[AMR][1000 genomes]
rs7537565	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150145800-150160000	Weak transcription	Right Atrium	heart
2	chr1:150158200-150160000	Enhancers	HSMM	muscle
3	chr1:150158200-150160000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr1:150158400-150160000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr1:150158600-150160000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:150158800-150160000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:150158800-150160200	Active TSS	Brain Angular Gyrus	brain
8	chr1:150158800-150160200	Enhancers	Brain Cingulate Gyrus	brain
9	chr1:150158800-150160200	Enhancers	NHDF-Ad	bronchial
10	chr1:150158800-150160400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:150158800-150160600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:150159000-150160000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:150159000-150160000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:150159000-150160200	Enhancers	Dnd41	blood
15	chr1:150159200-150160000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:150159200-150160000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr1:150159200-150160000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:150159200-150160000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr1:150159200-150160000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:150159200-150160000	Active TSS	Aorta	Aorta
21	chr1:150159200-150160000	Enhancers	Brain Substantia Nigra	brain
22	chr1:150159200-150160000	Enhancers	Fetal Intestine Small	intestine
23	chr1:150159200-150160000	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr1:150159200-150160200	Enhancers	HMEC	breast
25	chr1:150159200-150160400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr1:150159200-150160400	Enhancers	GM12878-XiMat	blood
27	chr1:150159200-150160400	Enhancers	HSMMtube	muscle
28	chr1:150159400-150160000	Enhancers	Brain Hippocampus Middle	brain
29	chr1:150159400-150160000	Enhancers	Placenta	Placenta
30	chr1:150159400-150160200	Enhancers	Primary B cells from peripheral blood	blood
31	chr1:150159400-150160200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr1:150159400-150160200	Enhancers	K562	blood
33	chr1:150159400-150160400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr1:150159400-150160400	Enhancers	Liver	Liver
35	chr1:150159400-150160600	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr1:150159600-150160000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr1:150159600-150160000	Enhancers	Colon Smooth Muscle	Colon
38	chr1:150159600-150160200	Enhancers	Primary B cells from cord blood	blood
39	chr1:150159600-150160200	Enhancers	Adipose Nuclei	Adipose
40	chr1:150159600-150160200	Enhancers	NH-A	brain
41	chr1:150159600-150160400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:150159600-150160400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr1:150159600-150160400	Enhancers	Brain Anterior Caudate	brain
44	chr1:150159600-150160400	Enhancers	A549	lung
45	chr1:150159600-150160600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:150159600-150164200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:150159600-150164400	Weak transcription	NHLF	lung
48	chr1:150159800-150160000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
49	chr1:150159800-150160000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:150159800-150160000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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