Variant report

Variant	rs3125048
Chromosome Location	chr13:67848249-67848250
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1033939	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1033941	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2985927	0.85[AFR][1000 genomes]
rs2991416	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs3013562	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3013565	0.82[AMR][1000 genomes]
rs9592507	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9599210	0.91[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv562140	chr13:67820503-67858550	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv562141	chr13:67842588-67878422	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67846400-67848400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:67847000-67848400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:67847400-67848400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:67847400-67850200	Weak transcription	HSMM	muscle
5	chr13:67847800-67848400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr13:67847800-67851600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:67848000-67848400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:67848000-67848400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:67848200-67851600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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