Variant report

Variant	rs3127309
Chromosome Location	chr13:61671329-61671330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1399315	0.90[AFR][1000 genomes]
rs3106592	0.96[ASN][1000 genomes]
rs3106598	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3106601	0.97[ASN][1000 genomes]
rs3106603	0.95[AFR][1000 genomes]
rs3106605	0.94[AFR][1000 genomes]
rs3121794	0.82[AFR][1000 genomes]
rs3121804	0.94[ASN][1000 genomes]
rs3121805	0.85[ASN][1000 genomes]
rs3121808	0.95[ASN][1000 genomes]
rs3127311	0.92[ASN][1000 genomes]
rs4581602	0.94[ASN][1000 genomes]
rs7319631	0.96[ASN][1000 genomes]
rs9539036	0.95[ASN][1000 genomes]
rs969192	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61670800-61671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:61671200-61671600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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