Variant report
| Variant | rs3128366 |
|---|---|
| Chromosome Location | chr1:112841974-112841975 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000231246 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10857952 | 0.87[ASN][1000 genomes] |
| rs12127798 | 0.88[ASN][1000 genomes] |
| rs2998335 | 0.86[ASN][1000 genomes] |
| rs3005799 | 0.86[ASN][1000 genomes] |
| rs3121989 | 0.91[ASN][1000 genomes] |
| rs3124030 | 0.81[ASN][1000 genomes] |
| rs3128364 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3128365 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3128367 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3128371 | 0.86[ASN][1000 genomes] |
| rs3128373 | 0.81[ASN][1000 genomes] |
| rs4294408 | 0.86[ASN][1000 genomes] |
| rs4433390 | 0.88[ASN][1000 genomes] |
| rs5021965 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6676747 | 0.91[ASN][1000 genomes] |
| rs9429470 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv13370 | chr1:112693290-113246263 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| 2 | nsv2454 | chr1:112813849-112858259 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv508526 | chr1:112839396-112915215 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
