Variant report

Variant	rs3129077
Chromosome Location	chr6:29610435-29610436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:29599418..29601085-chr6:29610262..29612133,2	K562	blood:
2	chr6:29608179..29610477-chr6:29617988..29619609,2	K562	blood:
3	chr6:29598626..29603210-chr6:29607516..29611410,5	K562	blood:
4	chr6:29609719..29612322-chr6:29612804..29614354,2	K562	blood:

Variant related genes	Relation type
ENSG00000204681	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3129060	0.80[ASN][1000 genomes]
rs3129064	0.80[ASN][1000 genomes]
rs3129083	0.82[ASN][1000 genomes]
rs3131855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131880	0.80[ASN][1000 genomes]
rs3131886	0.80[ASN][1000 genomes]
rs3131888	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7776082	0.80[ASN][1000 genomes]
rs9258053	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv969292	chr6:29604881-29612154	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29608400-29610600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:29608400-29610800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:29608400-29611000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:29608400-29611600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr6:29608400-29616400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:29608800-29611200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:29609600-29617200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:29609800-29610800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:29609800-29615600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:29609800-29615600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:29610000-29610600	Enhancers	K562	blood
12	chr6:29610000-29610800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:29610000-29611400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:29610000-29611600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:29610000-29615400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:29610000-29615400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:29610000-29615400	Weak transcription	HMEC	breast
18	chr6:29610000-29615400	Weak transcription	NHEK	skin
19	chr6:29610000-29615600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:29610000-29617200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:29610200-29610600	Enhancers	Primary T cells from cord blood	blood

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