Variant report

Variant	rs3130287
Chromosome Location	chr6:32050544-32050545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMARCC1	chr6:32050125-32051146	Hela-S3	cervix:	n/a	n/a
2	GATA3	chr6:32050370-32051499	MCF-7	breast:	n/a	chr6:32050402-32050413

No.	Distal block	Cell Line	Cell type
1	chr6:31761964..31763580-chr6:32048998..32050793,2	MCF-7	breast:
2	chr6:32049837..32052649-chr6:32149216..32151846,2	MCF-7	breast:
3	chr6:31939666..31941267-chr6:32050154..32052376,2	MCF-7	breast:
4	chr6:32049311..32051554-chr6:32056762..32058610,2	K562	blood:
5	chr6:32043068..32047294-chr6:32047999..32051583,6	MCF-7	breast:

Variant related genes	Relation type
RNA5SP206	TF binding region
ENSG00000204394	Chromatin interaction
ENSG00000204305	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000252512	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 51 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1800684	0.82[EUR][1000 genomes]
rs3096695	0.96[EUR][1000 genomes]
rs3117181	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3117182	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3117189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128761	0.81[EUR][1000 genomes]
rs3130279	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3130283	0.84[AMR][1000 genomes]
rs3130285	0.99[EUR][1000 genomes]
rs3130342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3130346	0.84[AMR][1000 genomes]
rs3130681	0.84[EUR][1000 genomes]
rs3130682	0.81[EUR][1000 genomes]
rs3130683	0.87[EUR][1000 genomes]
rs3134604	0.84[AMR][1000 genomes]
rs3134954	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9267658	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	nsv427751	chr6:31871512-32092843	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
8	nsv428141	chr6:31871512-32092843	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
9	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
10	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
11	nsv884513	chr6:31922575-32066025	Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
12	nsv884517	chr6:31931673-32057627	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
13	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
14	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
16	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
17	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
19	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
22	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
23	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
24	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
26	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
27	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
28	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
29	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
30	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
31	esv2829854	chr6:31964246-32053129	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
32	esv1797620	chr6:31965272-32065324	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
33	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
34	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
35	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
36	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
37	nsv884676	chr6:31994872-32069806	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
38	nsv884678	chr6:31996185-32057627	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
39	nsv538191	chr6:32007556-32052567	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
40	nsv538192	chr6:32007556-32056226	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
41	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
42	nsv884686	chr6:32018888-32066025	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
43	nsv932200	chr6:32019146-32059610	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
44	nsv602101	chr6:32019769-32052983	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
45	nsv884689	chr6:32030284-32064265	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
46	nsv884690	chr6:32043757-32066025	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
47	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
48	nsv884691	chr6:32044180-32066025	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv1020992	chr6:32044834-32073778	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
50	nsv884692	chr6:32044851-32064265	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:51)

SNP	Gene	Cis/trans	Tissue	Source
rs3130287	HLA-DRB5	trans	brain	seeQTL
rs3130287	XXbac-BPG248L24.12	cis	Whole Blood	GTEx
rs3130287	HLA-DRB1	cis	Adipose Subcutaneous	GTEx
rs3130287	HLA-DRB1	cis	Muscle Skeletal	GTEx
rs3130287	HLA-DRB6	cis	lymphoblastoid	seeQTL
rs3130287	XXbac-BPG248L24.12	cis	Artery Aorta	GTEx
rs3130287	HLA-DRB5	cis	Muscle Skeletal	GTEx
rs3130287	CCHCR1	cis	lymphoblastoid	seeQTL
rs3130287	HLA-DRB6	cis	Thyroid	GTEx
rs3130287	HLA-DRB5	cis	Artery Tibial	GTEx
rs3130287	HLA-DRB1	cis	Skin Sun Exposed Lower leg	GTEx
rs3130287	HLA-DRB5	cis	Adipose Subcutaneous	GTEx
rs3130287	HLA-DRB1	cis	Artery Tibial	GTEx
rs3130287	HLA-DRB1	cis	Esophagus Mucosa	GTEx
rs3130287	HSPA1L	cis	multi-tissue	Pritchard
rs3130287	ERG	trans	multi-tissue	Pritchard
rs3130287	HLA-DRB1	cis	Whole Blood	GTEx
rs3130287	HLA-C	cis	lymphoblastoid	GTEx
rs3130287	HLA-DQB1	cis	multi-tissue	Pritchard
rs3130287	LEMD2	cis	cerebellum	SCAN
rs3130287	HLA.DRB5	cis	multi-tissue	Pritchard
rs3130287	HLA-DRB5	cis	Stomach	GTEx
rs3130287	HLA-DRB5	cis	cerebellum	SCAN
rs3130287	HLA-DQA1	cis	lymphoblastoid	GTEx
rs3130287	HLA-DRB1	cis	multi-tissue	Pritchard
rs3130287	HLA-DRB5	cis	Whole Blood	GTEx
rs3130287	HLA-DRB5	cis	lymphoblastoid	seeQTL
rs3130287	HLA-DRB6	cis	Adipose Subcutaneous	GTEx
rs3130287	LIMS1	trans	multi-tissue	Pritchard
rs3130287	HLA-DQB1	cis	brain	seeQTL
rs3130287	HLA-DRB1	cis	lymphoblastoid	seeQTL
rs3130287	XXbac-BPG248L24.12	cis	Artery Tibial	GTEx
rs3130287	HLA-DQA2	cis	Whole Blood	GTEx
rs3130287	HLA-DRB5	cis	Esophagus Mucosa	GTEx
rs3130287	HLA-DRB5	cis	Skin Sun Exposed Lower leg	GTEx
rs3130287	HLA-DQB1	cis	lymphoblastoid	seeQTL
rs3130287	HLA-DRB5	cis	parietal	SCAN
rs3130287	HLA-DRB6	cis	Nerve Tibial	GTEx
rs3130287	HLA-DRB1	cis	Thyroid	GTEx
rs3130287	HLA-DRB5	cis	Thyroid	GTEx
rs3130287	HLA-DRA	cis	multi-tissue	Pritchard
rs3130287	HLA-DRB6	cis	Artery Tibial	GTEx
rs3130287	HLA-DQB1	cis	lymphoblastoid	GTEx
rs3130287	HLA-DRB5	cis	lymphoblastoid	GTEx
rs3130287	HCG27	cis	multi-tissue	Pritchard
rs3130287	HLA-DQA2	cis	lymphoblastoid	seeQTL
rs3130287	HLA-DRB5	cis	multi-tissue	Pritchard
rs3130287	HLA-DQB1	cis	Thyroid	GTEx
rs3130287	HLA-C	cis	multi-tissue	Pritchard
rs3130287	HLA-DRB6	cis	Whole Blood	GTEx
rs3130287	HLA-DRB5	cis	brain	seeQTL

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32015200-32052600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:32016600-32050600	Weak transcription	Pancreas	Pancrea
3	chr6:32038200-32055000	Weak transcription	Left Ventricle	heart
4	chr6:32038400-32051400	Weak transcription	Right Ventricle	heart
5	chr6:32041400-32054200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:32044000-32053400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:32045200-32053600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:32046600-32053000	Strong transcription	Fetal Intestine Small	intestine
9	chr6:32046800-32054200	Genic enhancers	Fetal Muscle Trunk	muscle
10	chr6:32047000-32050800	Genic enhancers	Placenta Amnion	Placenta Amnion
11	chr6:32047400-32051400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:32047600-32050800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:32048000-32050800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:32048200-32052200	Genic enhancers	Fetal Muscle Leg	muscle
15	chr6:32048400-32050800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:32048600-32050800	Genic enhancers	Ovary	ovary
17	chr6:32048800-32050800	Enhancers	Right Atrium	heart
18	chr6:32048800-32051200	Enhancers	HSMMtube	muscle
19	chr6:32048800-32052400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:32049000-32050800	Enhancers	Osteobl	bone
21	chr6:32049000-32052600	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:32049200-32050600	Weak transcription	Gastric	stomach
23	chr6:32049400-32050600	Weak transcription	HMEC	breast
24	chr6:32049400-32053000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:32049400-32059600	Weak transcription	Aorta	Aorta
26	chr6:32049600-32050600	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:32049600-32050600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:32049600-32050800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:32049600-32053600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:32049800-32050800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:32049800-32051000	Bivalent Enhancer	HepG2	liver
32	chr6:32049800-32052400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:32049800-32052400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:32050000-32050600	Genic enhancers	Duodenum Mucosa	Duodenum
35	chr6:32050000-32051000	Genic enhancers	Adipose Nuclei	Adipose
36	chr6:32050000-32051200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:32050000-32051200	Bivalent Enhancer	HSMM	muscle
38	chr6:32050000-32051200	Bivalent Enhancer	NH-A	brain
39	chr6:32050000-32051400	Flanking Active TSS	Hela-S3	cervix
40	chr6:32050000-32051600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:32050000-32052200	Genic enhancers	Placenta	Placenta
42	chr6:32050000-32053000	Strong transcription	Fetal Stomach	stomach
43	chr6:32050200-32050600	Strong transcription	Brain Anterior Caudate	brain
44	chr6:32050200-32051400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
45	chr6:32050200-32051400	Enhancers	Esophagus	oesophagus
46	chr6:32050200-32051400	Enhancers	NHEK	skin
47	chr6:32050400-32050600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:32050400-32050600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:32050400-32050800	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:32050400-32051000	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links