Variant report
| Variant | rs313102 |
|---|---|
| Chromosome Location | chr4:127554789-127554790 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:127548162..127549915-chr4:127554441..127556148,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11728316 | 0.87[CEU][hapmap] |
| rs13149437 | 0.83[EUR][1000 genomes] |
| rs17258361 | 0.87[EUR][1000 genomes] |
| rs178300 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs184330 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs313059 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs313081 | 0.90[EUR][1000 genomes] |
| rs313082 | 0.90[EUR][1000 genomes] |
| rs313084 | 0.90[EUR][1000 genomes] |
| rs313101 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs313120 | 0.90[EUR][1000 genomes] |
| rs313131 | 0.83[CEU][hapmap] |
| rs34165638 | 0.87[EUR][1000 genomes] |
| rs6534573 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6827431 | 0.87[EUR][1000 genomes] |
| rs6843476 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012833 | chr4:127468474-127760933 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv537242 | chr4:127468474-127760933 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv524850 | chr4:127470903-127768849 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1013854 | chr4:127508969-127663216 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1009499 | chr4:127532856-127659010 | Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv537243 | chr4:127532856-127659010 | Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:127552200-127557400 | Weak transcription | Gastric | stomach |
| 2 | chr4:127554400-127564600 | Weak transcription | K562 | blood |
