Variant report

Variant	rs3133935
Chromosome Location	chr8:110701502-110701503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110700391..110702644-chr8:110702809..110707037,3	K562	blood:
2	chr8:110551742..110554697-chr8:110699057..110701938,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147642	Chromatin interaction
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10090145	0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10505131	0.91[JPT][hapmap]
rs10505132	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11774663	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11998387	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13256586	0.88[ASN][1000 genomes]
rs13268243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1573853	0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2702	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs3108829	1.00[ASN][1000 genomes]
rs3108832	0.99[ASN][1000 genomes]
rs3108837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3108840	0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3108853	0.99[ASN][1000 genomes]
rs3108854	0.99[ASN][1000 genomes]
rs3108862	0.99[ASN][1000 genomes]
rs3108865	0.99[ASN][1000 genomes]
rs3108869	0.99[ASN][1000 genomes]
rs3133922	0.88[ASN][1000 genomes]
rs3133926	0.97[ASN][1000 genomes]
rs3133927	1.00[ASN][1000 genomes]
rs3133936	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3133937	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3134314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3134317	0.99[ASN][1000 genomes]
rs3134319	0.99[ASN][1000 genomes]
rs3134325	1.00[ASN][1000 genomes]
rs3134331	1.00[ASN][1000 genomes]
rs6469275	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6985646	0.90[ASN][1000 genomes]
rs7008447	0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110699800-110702600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:110700000-110702600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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