Variant report

Variant	rs3134085
Chromosome Location	chr8:119855228-119855229
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1493935	0.85[ASN][1000 genomes]
rs3133584	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134076	0.80[ASN][1000 genomes]
rs3134078	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134079	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134080	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134081	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134084	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119850400-119855400	Weak transcription	NH-A	brain
2	chr8:119850400-119855600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:119850400-119855600	Weak transcription	HSMM	muscle
4	chr8:119850400-119855600	Weak transcription	Osteobl	bone
5	chr8:119850400-119856200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:119854800-119857200	Enhancers	Hela-S3	cervix
7	chr8:119855000-119856800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:119855000-119856800	Enhancers	NHLF	lung
9	chr8:119855000-119857000	Enhancers	HMEC	breast
10	chr8:119855200-119855400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:119855200-119857000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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