Variant report

Variant	rs3134395
Chromosome Location	chr8:118726160-118726161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1396349	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1508556	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508557	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3105759	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3105762	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3105763	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3115774	0.87[EUR][1000 genomes]
rs926148	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831438	chr8:118679896-118823600	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv891410	chr8:118684994-118730344	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118710400-118737200	Weak transcription	Aorta	Aorta
2	chr8:118722400-118726200	Enhancers	NHEK	skin
3	chr8:118723200-118726400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:118724000-118726800	Enhancers	Fetal Lung	lung
5	chr8:118724400-118726400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:118724400-118726600	Enhancers	Fetal Muscle Leg	muscle
7	chr8:118724600-118726200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:118724600-118726200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:118724600-118726200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:118724600-118726200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:118724600-118726200	Enhancers	NHLF	lung
12	chr8:118724600-118726400	Enhancers	HSMMtube	muscle
13	chr8:118724800-118726200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr8:118724800-118726200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr8:118724800-118726200	Enhancers	NHDF-Ad	bronchial
16	chr8:118724800-118726400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr8:118724800-118726400	Enhancers	HSMM	muscle
18	chr8:118725200-118726200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:118725200-118726200	Enhancers	Fetal Kidney	kidney
20	chr8:118725200-118726200	Enhancers	Osteobl	bone
21	chr8:118725200-118726400	Enhancers	Fetal Intestine Large	intestine
22	chr8:118725200-118726400	Enhancers	Placenta	Placenta
23	chr8:118725200-118726400	Enhancers	Fetal Stomach	stomach
24	chr8:118725200-118726600	Enhancers	Ovary	ovary
25	chr8:118725400-118726200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:118725400-118726200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:118725400-118726200	Enhancers	Fetal Intestine Small	intestine
28	chr8:118725400-118726200	Enhancers	Stomach Mucosa	stomach
29	chr8:118725400-118726400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:118725600-118726400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:118725600-118726400	Enhancers	Right Atrium	heart
32	chr8:118725600-118730600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:118725800-118726400	Enhancers	Left Ventricle	heart
34	chr8:118725800-118726600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr8:118726000-118726200	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr8:118726000-118726200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr8:118726000-118726200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:118726000-118727400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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