Variant report

Variant	rs3136402
Chromosome Location	chr8:95451087-95451088
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr8:95451022-95451285	GM12878	blood:	n/a	n/a
2	MAX	chr8:95450931-95451226	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95449447..95452097-chr8:95455615..95457152,2	K562	blood:
2	chr8:95446159..95448906-chr8:95449268..95451697,2	K562	blood:

Variant related genes	Relation type
FSBP	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3136417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3136418	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3136423	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv891202	chr8:95445660-95456986	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95432400-95478600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:95442600-95465400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:95445600-95455000	Weak transcription	Dnd41	blood
4	chr8:95448800-95457200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:95449000-95452800	Weak transcription	Pancreas	Pancrea
6	chr8:95449000-95452800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:95449000-95455000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:95449200-95451800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:95449400-95485200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:95449400-95486200	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:95449600-95451200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:95449600-95451800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:95449600-95452800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr8:95449600-95453000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:95449600-95453000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr8:95449600-95454000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:95449600-95455200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:95449800-95451200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:95449800-95451200	Enhancers	Brain Germinal Matrix	brain
20	chr8:95449800-95451200	Weak transcription	Stomach Mucosa	stomach
21	chr8:95449800-95452400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr8:95449800-95452600	Enhancers	Primary T cells from cord blood	blood
23	chr8:95449800-95452600	Weak transcription	Thymus	Thymus
24	chr8:95449800-95452800	Weak transcription	Primary B cells from cord blood	blood
25	chr8:95449800-95452800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr8:95449800-95452800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr8:95449800-95452800	Weak transcription	Liver	Liver
28	chr8:95449800-95452800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr8:95449800-95453400	Weak transcription	Fetal Thymus	thymus
30	chr8:95449800-95454200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr8:95449800-95476200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr8:95449800-95479600	Weak transcription	NH-A	brain
33	chr8:95450000-95451200	Weak transcription	Fetal Intestine Small	intestine
34	chr8:95450000-95452000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr8:95450000-95452200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr8:95450000-95452600	Weak transcription	Fetal Kidney	kidney
37	chr8:95450000-95452600	Enhancers	A549	lung
38	chr8:95450000-95452800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr8:95450000-95452800	Weak transcription	Fetal Intestine Large	intestine
40	chr8:95450000-95454000	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr8:95450000-95454000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:95450000-95455000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:95450000-95455400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr8:95450000-95458800	Weak transcription	Fetal Stomach	stomach
45	chr8:95450000-95468200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:95450000-95486000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr8:95450200-95451400	Weak transcription	HUVEC	blood vessel
48	chr8:95450200-95452400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr8:95450200-95452600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr8:95450200-95452600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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