Variant report

Variant	rs3136410
Chromosome Location	chr8:95447088-95447089
allele	-/GAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95437761..95439579-chr8:95445352..95447331,2	MCF-7	breast:
2	chr8:95446159..95448906-chr8:95449268..95451697,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1031480	chr8:95375696-95447407	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3446413	chr8:95444376-95448274	Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
6	nsv611749	chr8:95445505-95447407	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv891202	chr8:95445660-95456986	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95412200-95447200	Weak transcription	Fetal Thymus	thymus
2	chr8:95430400-95447200	Weak transcription	Fetal Intestine Small	intestine
3	chr8:95430600-95447400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:95431000-95447400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:95431000-95447400	Weak transcription	HSMM	muscle
6	chr8:95431000-95447400	Weak transcription	NHDF-Ad	bronchial
7	chr8:95431000-95448600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:95431000-95448600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:95432400-95478600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:95433800-95447200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:95434000-95447400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr8:95438200-95447600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:95441800-95448600	Weak transcription	Hela-S3	cervix
14	chr8:95442000-95447600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:95442200-95447200	Weak transcription	Right Ventricle	heart
16	chr8:95442200-95447200	Weak transcription	HUVEC	blood vessel
17	chr8:95442400-95447200	Weak transcription	Fetal Kidney	kidney
18	chr8:95442600-95465400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr8:95443200-95447200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:95443200-95447200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:95444000-95447200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:95444000-95447200	Weak transcription	NH-A	brain
23	chr8:95444000-95447400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr8:95444000-95447400	Weak transcription	NHEK	skin
25	chr8:95444000-95448800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:95444400-95447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr8:95444600-95447200	Weak transcription	Adipose Nuclei	Adipose
28	chr8:95444600-95447200	Weak transcription	Ovary	ovary
29	chr8:95444800-95449600	Active TSS	GM12878-XiMat	blood
30	chr8:95445000-95447200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr8:95445000-95447200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:95445400-95447200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr8:95445600-95447200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr8:95445600-95448800	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr8:95445600-95455000	Weak transcription	Dnd41	blood
36	chr8:95446200-95447400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr8:95446400-95447200	Enhancers	Fetal Lung	lung
38	chr8:95446400-95447400	Active TSS	HepG2	liver
39	chr8:95446400-95448600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr8:95446400-95449000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:95446400-95449200	Active TSS	H1 Cell Line	embryonic stem cell
42	chr8:95446400-95449200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr8:95446400-95449400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:95446600-95447400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr8:95446600-95447400	Active TSS	Fetal Brain Female	brain
46	chr8:95446600-95447400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr8:95446600-95447400	Active TSS	A549	lung
48	chr8:95446600-95448600	Active TSS	Brain Angular Gyrus	brain
49	chr8:95446600-95448600	Active TSS	Fetal Intestine Large	intestine
50	chr8:95446600-95448800	Active TSS	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links