Variant report

Variant	rs31410
Chromosome Location	chr14:79437082-79437083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs31364	1.00[AMR][1000 genomes]
rs31365	1.00[AMR][1000 genomes]
rs31366	1.00[AMR][1000 genomes]
rs31367	1.00[AMR][1000 genomes]
rs31418	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs31440	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79426600-79437200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:79426600-79437400	Weak transcription	Brain Angular Gyrus	brain
3	chr14:79431200-79437200	Weak transcription	GM12878-XiMat	blood
4	chr14:79434800-79441400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:79436000-79437200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:79436000-79437200	Enhancers	HUVEC	blood vessel
7	chr14:79436000-79440600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:79436200-79437200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:79436200-79437400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:79436200-79438600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:79436400-79440800	Weak transcription	NH-A	brain
12	chr14:79436800-79437400	Enhancers	Brain Germinal Matrix	brain
13	chr14:79436800-79437600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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