Variant report

Variant	rs31425
Chromosome Location	chr14:79426489-79426490
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:79425453..79426658-chr14:81316149..81316920,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs31424	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs31426	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79416800-79436000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:79425800-79427000	Enhancers	Rectal Smooth Muscle	rectum
3	chr14:79426200-79426600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:79426200-79426600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:79426200-79426600	Enhancers	Adipose Nuclei	Adipose
6	chr14:79426200-79426600	Active TSS	Brain Angular Gyrus	brain
7	chr14:79426200-79426600	Active TSS	Brain Anterior Caudate	brain
8	chr14:79426200-79426600	Active TSS	Brain Hippocampus Middle	brain
9	chr14:79426200-79426600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:79426200-79426600	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr14:79426200-79426600	Active TSS	NHLF	lung
12	chr14:79426200-79426800	Active TSS	Ovary	ovary
13	chr14:79426200-79426800	Active TSS	Right Atrium	heart
14	chr14:79426200-79426800	Active TSS	Stomach Smooth Muscle	stomach
15	chr14:79426200-79426800	Active TSS	NHDF-Ad	bronchial
16	chr14:79426400-79426600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:79426400-79426600	Active TSS	Colon Smooth Muscle	Colon
18	chr14:79426400-79426600	Flanking Active TSS	Fetal Lung	lung
19	chr14:79426400-79426600	Flanking Active TSS	HSMM	muscle
20	chr14:79426400-79426800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:79426400-79426800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:79426400-79426800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr14:79426400-79426800	Active TSS	Aorta	Aorta
24	chr14:79426400-79426800	Flanking Active TSS	Osteobl	bone
25	chr14:79426400-79428200	Enhancers	HUVEC	blood vessel

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