Variant report

Variant	rs314722
Chromosome Location	chr2:125559447-125559448
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10177603	0.81[JPT][hapmap]
rs12471937	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13432413	0.81[JPT][hapmap]
rs17011975	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs17321617	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17393515	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2123855	0.81[JPT][hapmap]
rs2168024	0.81[JPT][hapmap]
rs2602643	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs314702	0.81[CHD][hapmap]
rs314705	0.81[CHD][hapmap]
rs314707	1.00[YRI][hapmap]
rs314709	0.81[CHD][hapmap]
rs314712	0.81[CHD][hapmap]
rs314716	1.00[YRI][hapmap]
rs314721	1.00[YRI][hapmap]
rs314724	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724655	0.81[JPT][hapmap]
rs961459	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125558800-125559800	Enhancers	Liver	Liver
2	chr2:125559000-125559800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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