Variant report

Variant	rs317856
Chromosome Location	chr4:16161565-16161566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10006159	0.88[JPT][hapmap]
rs1025897	0.85[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap]
rs10939657	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13133263	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs13634	0.81[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs1618243	0.85[ASN][1000 genomes]
rs1712492	0.81[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs1712495	0.86[ASN][1000 genomes]
rs192898	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs203434	0.89[CHD][hapmap];0.82[JPT][hapmap]
rs203435	0.82[JPT][hapmap]
rs317853	0.92[ASN][1000 genomes]
rs317857	0.88[ASN][1000 genomes]
rs317862	0.93[ASN][1000 genomes]
rs317866	0.85[ASN][1000 genomes]
rs317873	0.81[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs317908	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs317909	0.92[ASN][1000 genomes]
rs4317201	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6812660	0.81[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap]
rs961449	0.81[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16150800-16166600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:16152000-16161600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:16152000-16163800	Weak transcription	Thymus	Thymus
4	chr4:16153000-16163600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:16153000-16164400	Weak transcription	NH-A	brain
6	chr4:16153200-16165200	Weak transcription	HSMM	muscle
7	chr4:16153600-16165600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:16154400-16161600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:16154400-16163000	Weak transcription	Primary T cells from cord blood	blood
10	chr4:16154800-16161800	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:16154800-16164400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:16156000-16163200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:16157000-16163200	Enhancers	Fetal Heart	heart
14	chr4:16157000-16164400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr4:16157200-16166800	Weak transcription	Brain Angular Gyrus	brain
16	chr4:16157400-16161600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:16157400-16164200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr4:16157600-16161600	Enhancers	Fetal Intestine Small	intestine
19	chr4:16157600-16161800	Weak transcription	Adipose Nuclei	Adipose
20	chr4:16157600-16163600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:16157600-16164600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:16157800-16161600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:16157800-16164400	Weak transcription	Brain Anterior Caudate	brain
24	chr4:16157800-16164600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:16157800-16170600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr4:16157800-16180000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr4:16157800-16180400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr4:16158000-16161600	Weak transcription	Aorta	Aorta
29	chr4:16158000-16165000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:16158000-16175400	Weak transcription	NHDF-Ad	bronchial
31	chr4:16158200-16161600	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:16158200-16161800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:16158200-16161800	Weak transcription	Fetal Lung	lung
34	chr4:16158200-16163600	Weak transcription	Spleen	Spleen
35	chr4:16158200-16163800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr4:16158200-16164400	Weak transcription	Fetal Stomach	stomach
37	chr4:16158400-16163800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr4:16159000-16161600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:16159000-16163800	Enhancers	Fetal Intestine Large	intestine
40	chr4:16159400-16161800	Weak transcription	Colonic Mucosa	Colon
41	chr4:16159400-16164600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr4:16159600-16163400	Weak transcription	Dnd41	blood
43	chr4:16159600-16164000	Enhancers	Stomach Mucosa	stomach
44	chr4:16159600-16164800	Weak transcription	K562	blood
45	chr4:16159800-16161600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:16159800-16161600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr4:16159800-16163800	Weak transcription	Brain Substantia Nigra	brain
48	chr4:16159800-16167400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:16160000-16161600	Weak transcription	Lung	lung
50	chr4:16160000-16164600	Weak transcription	Brain Germinal Matrix	brain

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