Variant report

Variant	rs317903
Chromosome Location	chr4:16138165-16138166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4159	0.85[ASN][1000 genomes]
rs736464	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs317903	LCORL	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16128200-16142600	Weak transcription	Right Atrium	heart
2	chr4:16135600-16138400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:16136000-16140400	Weak transcription	Stomach Mucosa	stomach
4	chr4:16136400-16144600	Enhancers	Fetal Muscle Leg	muscle
5	chr4:16137400-16144400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:16137600-16138800	Enhancers	Fetal Stomach	stomach
7	chr4:16137600-16139200	Enhancers	HSMMtube	muscle
8	chr4:16137600-16140800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:16137600-16141000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:16137800-16139200	Enhancers	HSMM	muscle
11	chr4:16137800-16140000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:16138000-16140800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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