Variant report

Variant	rs318027
Chromosome Location	chr5:41408451-41408452
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1460956	1.00[AMR][1000 genomes]
rs160965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1675366	1.00[AMR][1000 genomes]
rs167626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1817335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs184372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs318848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs680101	1.00[AMR][1000 genomes]
rs7717606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs985850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41389800-41409000	Weak transcription	Ovary	ovary
2	chr5:41392400-41409400	Weak transcription	Right Ventricle	heart
3	chr5:41404000-41412000	Enhancers	Fetal Heart	heart
4	chr5:41404800-41409800	Enhancers	Fetal Intestine Large	intestine
5	chr5:41405400-41410600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:41405800-41408800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:41405800-41410000	Enhancers	Fetal Intestine Small	intestine
8	chr5:41407200-41408800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:41407200-41409200	Weak transcription	Left Ventricle	heart
10	chr5:41407200-41409400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:41407400-41408800	Enhancers	A549	lung
12	chr5:41407400-41410600	Weak transcription	Pancreas	Pancrea
13	chr5:41407800-41408800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:41407800-41409000	Weak transcription	HepG2	liver
15	chr5:41408200-41409600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:41408200-41409600	Enhancers	HMEC	breast
17	chr5:41408200-41410000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:41408200-41410000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr5:41408400-41409600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:41408400-41409800	Enhancers	NHDF-Ad	bronchial
21	chr5:41408400-41409800	Enhancers	Osteobl	bone
22	chr5:41408400-41410000	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links