Variant report

Variant	rs3181347
Chromosome Location	chr9:117694317-117694318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117676811..117678604-chr9:117693310..117696147,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3181196	1.00[CEU][hapmap]
rs4322082	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv6680	chr9:117690388-117699304	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117692800-117695200	Enhancers	Fetal Lung	lung
2	chr9:117693200-117697200	Weak transcription	Adipose Nuclei	Adipose
3	chr9:117693400-117694400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr9:117693400-117694400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr9:117693400-117694400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:117693400-117694400	Flanking Active TSS	Thymus	Thymus
7	chr9:117693400-117695200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr9:117693600-117694400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr9:117693600-117694400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr9:117693600-117694400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:117693600-117694400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:117693600-117697200	Weak transcription	Right Atrium	heart
13	chr9:117693800-117695000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr9:117693800-117697800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr9:117693800-117698800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr9:117694000-117695200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:117694000-117698600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:117694200-117694400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:117694200-117694600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:117694200-117699600	Weak transcription	Primary hematopoietic stem cells	blood

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