Variant report

Variant	rs320561
Chromosome Location	chr8:112878133-112878134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:112877538..112880401-chr8:112881600..112883445,2	K562	blood:
2	chr11:61100776..61103699-chr8:112876194..112878368,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149476	Chromatin interaction
ENSG00000167986	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1397369	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1397370	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3106198	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs320503	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs320505	0.80[AMR][1000 genomes]
rs320507	0.80[AMR][1000 genomes]
rs320510	0.80[AMR][1000 genomes]
rs320512	0.80[AMR][1000 genomes]
rs320513	0.80[AMR][1000 genomes]
rs320514	0.80[AMR][1000 genomes]
rs320515	0.80[AMR][1000 genomes]
rs320562	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs320563	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs320565	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs396807	0.80[AMR][1000 genomes]
rs417300	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs440036	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs446737	0.80[AMR][1000 genomes]
rs451616	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4876440	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6469387	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7812642	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7833965	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv6350	chr8:112864932-112909643	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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