Variant report

Variant	rs3217770
Chromosome Location	chr4:122739615-122739616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:122736991..122740974-chr4:122741113..122746260,6	MCF-7	breast:
2	chr4:122738481..122743178-chr4:122755904..122760615,4	K562	blood:

Variant related genes	Relation type
ENSG00000145386	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11930245	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11930756	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11933339	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11934168	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11942369	1.00[EUR][1000 genomes]
rs1507987	0.83[AMR][1000 genomes]
rs1507988	0.83[AMR][1000 genomes]
rs17005269	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17005276	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2661556	0.83[AMR][1000 genomes]
rs2706797	0.83[AMR][1000 genomes]
rs34669312	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3811743	0.83[AMR][1000 genomes]
rs4001033	0.83[AMR][1000 genomes]
rs4132552	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61639241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6845842	1.00[EUR][1000 genomes]
rs72915930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72915936	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72915942	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72915943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72915957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72915958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72917987	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72917996	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72918000	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72919903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72919909	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769235	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769240	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv997539	chr4:122544104-123274266	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv530157	chr4:122557302-123248756	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122723000-122743600	Weak transcription	Esophagus	oesophagus
2	chr4:122723000-122743600	Weak transcription	Small Intestine	intestine
3	chr4:122723000-122744200	Weak transcription	Gastric	stomach
4	chr4:122723000-122744600	Weak transcription	Aorta	Aorta
5	chr4:122723200-122741800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr4:122723200-122743400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:122723200-122743600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:122723200-122743800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:122723400-122744200	Weak transcription	Stomach Mucosa	stomach
10	chr4:122723600-122742200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:122723600-122742400	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:122723600-122742800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:122723800-122740000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:122723800-122740000	Strong transcription	Osteobl	bone
15	chr4:122723800-122740400	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:122723800-122740400	Strong transcription	Fetal Intestine Large	intestine
17	chr4:122723800-122740600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:122723800-122741800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:122723800-122742200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:122723800-122742400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:122723800-122743000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:122723800-122743000	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr4:122723800-122743000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:122724000-122740000	Strong transcription	Primary B cells from cord blood	blood
25	chr4:122724000-122740200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:122724000-122740400	Strong transcription	Placenta	Placenta
27	chr4:122724000-122740400	Strong transcription	NH-A	brain
28	chr4:122724000-122741800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr4:122724000-122742600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:122724000-122743400	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr4:122724200-122740200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:122724200-122740400	Strong transcription	Stomach Smooth Muscle	stomach
33	chr4:122724200-122741000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr4:122724200-122741200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:122724200-122742800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr4:122724400-122741000	Strong transcription	Duodenum Mucosa	Duodenum
37	chr4:122724400-122742200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr4:122724400-122742600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr4:122724400-122744000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr4:122724600-122742000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:122725200-122740200	Strong transcription	Adipose Nuclei	Adipose
42	chr4:122725200-122741800	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr4:122725400-122740000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:122725400-122742600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:122725400-122742600	Strong transcription	Fetal Thymus	thymus
46	chr4:122725600-122740000	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr4:122725600-122740400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:122725800-122740600	Strong transcription	Brain Hippocampus Middle	brain
49	chr4:122726400-122740200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:122727400-122739800	Strong transcription	Skeletal Muscle Female	skeletal muscle

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