Variant report

Variant	rs3218610
Chromosome Location	chr11:65101315-65101316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:65100982-65101705	Hela-S3	cervix:	n/a	n/a
2	SIN3AK20	chr11:65100948-65102215	MCF-7	breast:	n/a	n/a
3	POLR2A	chr11:65100995-65101560	SK-N-SH	brain:	n/a	n/a
4	SIN3AK20	chr11:65100962-65101909	PANC-1	pancreas:	n/a	n/a
5	POLR2A	chr11:65100949-65101730	HUVEC	blood vessel:	n/a	n/a
6	PBX3	chr11:65100997-65101494	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chr11:65100944-65102104	ProgFib	skin:	n/a	n/a
8	YY1	chr11:65101092-65101608	K562	blood:	n/a	chr11:65101347-65101367 chr11:65101494-65101506 chr11:65101498-65101506
9	YY1	chr11:65101152-65101863	K562	blood:	n/a	chr11:65101347-65101367 chr11:65101767-65101776 chr11:65101494-65101506 chr11:65101498-65101506 chr11:65101816-65101827
10	POLR2A	chr11:65100961-65101894	MCF-7	breast:	n/a	n/a
11	MAX	chr11:65101054-65101734	NB4	blood:	n/a	n/a
12	PAX5	chr11:65101060-65101397	GM12878	blood:	n/a	n/a
13	MAZ	chr11:65101154-65101796	K562	blood:	n/a	n/a
14	POLR2A	chr11:65100972-65101729	MCF-7	breast:	n/a	n/a
15	YY1	chr11:65101103-65101952	GM12891	blood:	n/a	chr11:65101347-65101367 chr11:65101767-65101776 chr11:65101494-65101506 chr11:65101498-65101506 chr11:65101816-65101827
16	POLR2A	chr11:65101075-65101572	GM12878	blood:	n/a	n/a
17	NRF1	chr11:65101105-65101469	HepG2	liver:	n/a	chr11:65101300-65101314 chr11:65101254-65101268 chr11:65101256-65101265 chr11:65101143-65101157 chr11:65101239-65101250 chr11:65101254-65101265 chr11:65101146-65101157 chr11:65101302-65101311 chr11:65101251-65101265 chr11:65101146-65101160 chr11:65101297-65101311 chr11:65101300-65101311 chr11:65101300-65101311 chr11:65101254-65101265 chr11:65101148-65101157
18	POLR2A	chr11:65101002-65101567	GM18505	blood:	n/a	n/a
19	GTF2F1	chr11:65101220-65101676	K562	blood:	n/a	n/a
20	JUND	chr11:65101264-65101607	H1-hESC	embryonic stem cell:	n/a	n/a
21	TAF1	chr11:65100980-65101626	PFSK-1	brain:	n/a	n/a
22	YY1	chr11:65101253-65101416	K562	blood:	n/a	chr11:65101347-65101367
23	TAF1	chr11:65101139-65101526	PFSK-1	brain:	n/a	n/a
24	POLR2A	chr11:65100951-65101563	GM12892	blood:	n/a	n/a
25	POLR2A	chr11:65100959-65101843	HUVEC	blood vessel:	n/a	n/a
26	REST	chr11:65101245-65101619	PANC-1	pancreas:	n/a	chr11:65101289-65101302
27	POLR2A	chr11:65101148-65101555	MCF10A-Er-Src	breast:	n/a	n/a
28	YY1	chr11:65101156-65101833	H1-hESC	embryonic stem cell:	n/a	chr11:65101347-65101367 chr11:65101767-65101776 chr11:65101494-65101506 chr11:65101498-65101506 chr11:65101816-65101827
29	YY1	chr11:65101097-65101728	HCT-116	colon:	n/a	chr11:65101347-65101367 chr11:65101494-65101506 chr11:65101498-65101506
30	TCF12	chr11:65101037-65101532	GM12878	blood:	n/a	chr11:65101415-65101425
31	POLR2A	chr11:65100961-65101570	GM12892	blood:	n/a	n/a
32	POLR2A	chr11:65101187-65101521	GM12891	blood:	n/a	n/a
33	MAX	chr11:65100998-65101630	ECC-1	luminal epithelium:	n/a	n/a
34	POLR2A	chr11:65100976-65101594	U87	brain:	n/a	n/a
35	EP300	chr11:65101199-65101453	GM12878	blood:	n/a	chr11:65101298-65101314
36	SP4	chr11:65101031-65101583	H1-hESC	embryonic stem cell:	n/a	chr11:65101443-65101459
37	POLR2A	chr11:65101060-65101428	A549	lung:	n/a	n/a
38	POLR2A	chr11:65101038-65101579	H1-hESC	embryonic stem cell:	n/a	n/a
39	POLR2A	chr11:65100980-65101902	ECC-1	luminal epithelium:	n/a	n/a
40	MYC	chr11:65101104-65101681	NB4	blood:	n/a	n/a
41	SMC3	chr11:65101161-65101761	Hela-S3	cervix:	n/a	chr11:65101506-65101520
42	POLR2A	chr11:65101083-65101639	GM12891	blood:	n/a	n/a
43	TBP	chr11:65101094-65101614	K562	blood:	n/a	n/a
44	USF1	chr11:65101053-65101367	SK-N-SH_RA	brain:	n/a	n/a
45	POLR2A	chr11:65101151-65101536	GM12891	blood:	n/a	n/a
46	RELA	chr11:65101111-65101631	GM18951	blood:	n/a	n/a
47	POLR2A	chr11:65101129-65101576	GM12892	blood:	n/a	n/a
48	YY1	chr11:65100984-65101970	GM12878	blood:	n/a	chr11:65101347-65101367 chr11:65101767-65101776 chr11:65101494-65101506 chr11:65101498-65101506 chr11:65101816-65101827
49	POLR2A	chr11:65100964-65101636	ECC-1	luminal epithelium:	n/a	n/a
50	POLR2A	chr11:65101001-65101880	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:64862541..64864167-chr11:65101190..65102852,2	MCF-7	breast:
2	chr11:65029300..65032261-chr11:65099980..65102412,3	K562	blood:
3	chr11:65081631..65084592-chr11:65099872..65104597,5	K562	blood:
4	chr11:65098911..65102850-chr11:65147012..65151675,4	MCF-7	breast:
5	chr11:65100032..65102632-chr11:65307572..65309259,3	MCF-7	breast:
6	chr11:65082224..65084911-chr11:65099875..65102878,3	K562	blood:
7	chr11:65099781..65103974-chr11:65120675..65126515,7	MCF-7	breast:
8	chr11:65101009..65102671-chr11:65109957..65112213,2	K562	blood:
9	chr11:65100243..65104610-chr11:65105410..65109851,8	K562	blood:
10	chr11:65100635..65103447-chr11:65112370..65113916,2	K562	blood:
11	chr11:65099880..65103900-chr11:65265146..65267934,3	MCF-7	breast:
12	chr11:65099718..65102956-chr11:65121267..65125924,4	MCF-7	breast:
13	chr11:65100322..65103953-chr11:65104304..65109119,7	MCF-7	breast:
14	chr11:65081241..65085742-chr11:65099388..65103053,6	MCF-7	breast:
15	chr11:65082396..65084824-chr11:65098924..65101432,3	MCF-7	breast:
16	chr11:65028467..65031251-chr11:65099786..65102995,3	MCF-7	breast:
17	chr11:65100087..65102594-chr11:65381500..65383141,2	MCF-7	breast:

Variant related genes	Relation type
DPF2	TF binding region
ENSG00000173327	Chromatin interaction
ENSG00000133884	Chromatin interaction
ENSG00000173825	Chromatin interaction
ENSG00000168056	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000149798	Chromatin interaction
ENSG00000162241	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2307266	1.00[AMR][1000 genomes]
rs4149847	1.00[YRI][hapmap]
rs4647569	1.00[AMR][1000 genomes]
rs4647570	1.00[AMR][1000 genomes]
rs4647593	1.00[AMR][1000 genomes]
rs7117137	1.00[AMR][1000 genomes]
rs7942977	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases
4	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
5	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
6	esv3448805	chr11:65099726-65102224	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65100600-65101400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:65100800-65101400	Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr11:65100800-65101400	Active TSS	Brain Germinal Matrix	brain
4	chr11:65100800-65101800	Active TSS	Primary monocytes fromperipheralblood	blood
5	chr11:65100800-65101800	Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr11:65100800-65101800	Active TSS	Primary B cells from peripheral blood	blood
7	chr11:65100800-65101800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:65100800-65101800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:65100800-65101800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:65100800-65101800	Active TSS	Colonic Mucosa	Colon
11	chr11:65100800-65101800	Active TSS	Fetal Thymus	thymus
12	chr11:65100800-65101800	Active TSS	Monocytes-CD14+_RO01746	blood
13	chr11:65100800-65102000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:65100800-65102000	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr11:65100800-65102000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:65100800-65102000	Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr11:65100800-65102000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:65100800-65102000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:65100800-65102000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
20	chr11:65100800-65102000	Active TSS	Fetal Brain Female	brain
21	chr11:65100800-65102000	Active TSS	Fetal Intestine Large	intestine
22	chr11:65100800-65102000	Active TSS	Fetal Muscle Leg	muscle
23	chr11:65100800-65102000	Active TSS	Placenta	Placenta
24	chr11:65100800-65102000	Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr11:65100800-65102000	Active TSS	Hela-S3	cervix
26	chr11:65100800-65102000	Active TSS	HMEC	breast
27	chr11:65100800-65102000	Active TSS	HUVEC	blood vessel
28	chr11:65100800-65102000	Active TSS	Osteobl	bone
29	chr11:65100800-65102200	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr11:65100800-65102200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:65100800-65102200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:65100800-65102200	Active TSS	Fetal Stomach	stomach
33	chr11:65100800-65102200	Active TSS	Stomach Smooth Muscle	stomach
34	chr11:65100800-65102200	Active TSS	Thymus	Thymus
35	chr11:65100800-65102400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:65100800-65102400	Active TSS	Fetal Intestine Small	intestine
37	chr11:65100800-65102600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:65100800-65102600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:65100800-65102600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:65100800-65102600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:65100800-65102600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:65100800-65102800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:65100800-65103000	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr11:65101000-65101400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr11:65101000-65101400	Enhancers	Fetal Brain Male	brain
46	chr11:65101000-65101400	Transcr. at gene 5' and 3'	Right Atrium	heart
47	chr11:65101000-65101800	Active TSS	Primary T cells from cord blood	blood
48	chr11:65101000-65101800	Active TSS	Primary T cells fromperipheralblood	blood
49	chr11:65101000-65101800	Active TSS	Primary hematopoietic stem cells	blood
50	chr11:65101000-65101800	Active TSS	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links