Variant report

Variant	rs322007
Chromosome Location	chr7:78279132-78279133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10240204	1.00[ASN][1000 genomes]
rs10240480	1.00[ASN][1000 genomes]
rs10243691	1.00[ASN][1000 genomes]
rs10245276	1.00[ASN][1000 genomes]
rs10279670	1.00[ASN][1000 genomes]
rs1207878	1.00[ASN][1000 genomes]
rs17454128	1.00[ASW][hapmap]
rs2159017	0.91[CEU][hapmap]
rs323131	1.00[ASN][1000 genomes]
rs38125	1.00[ASN][1000 genomes]
rs61617831	1.00[ASN][1000 genomes]
rs9886032	1.00[ASN][1000 genomes]
rs9886142	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464597	chr7:78269375-78301419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv607656	chr7:78269375-78301419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs322007	PION	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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