Variant report

Variant	rs322337
Chromosome Location	chr7:136998483-136998484
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1616000	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs322331	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[EUR][1000 genomes]
rs322332	0.91[CEU][hapmap];1.00[EUR][1000 genomes]
rs322335	1.00[CEU][hapmap];0.94[CHB][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs322336	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs322338	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs322340	1.00[CEU][hapmap];0.94[CHB][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs322346	1.00[CEU][hapmap];0.94[CHB][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889240	chr7:136972027-137038092	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv889241	chr7:136976713-137038092	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136982800-137008400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:136991200-137001400	Weak transcription	Fetal Stomach	stomach
3	chr7:136991400-137001200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:136991600-137013000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:136991800-137001200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:136992800-137001400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:136993200-137007000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:136995800-137000800	Enhancers	Brain Substantia Nigra	brain
9	chr7:136996000-137002800	Enhancers	Brain Hippocampus Middle	brain
10	chr7:136996200-136999200	Enhancers	Brain Angular Gyrus	brain
11	chr7:136996600-136999000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:136997000-136999600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:136997800-136998600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr7:136997800-136999200	Enhancers	Fetal Heart	heart
15	chr7:136997800-136999400	Enhancers	Brain Anterior Caudate	brain
16	chr7:136998000-136999000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:136998000-137001400	Weak transcription	Fetal Brain Male	brain
18	chr7:136998200-136998800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:136998200-137010200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr7:136998200-137013000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:136998400-136999000	Enhancers	Brain Cingulate Gyrus	brain
22	chr7:136998400-137000200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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