Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25268545..25270522-chr3:25294614..25297344,2	K562	blood:
2	chr3:25295460..25296960-chr8:144924480..144925983,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11924843	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12632391	0.90[ASN][1000 genomes]
rs13097976	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1595161	0.90[ASN][1000 genomes]
rs1601163	0.97[ASN][1000 genomes]
rs1601164	0.97[ASN][1000 genomes]
rs2117968	0.97[ASN][1000 genomes]
rs2117969	0.87[ASN][1000 genomes]
rs2363593	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs322706	0.84[ASN][1000 genomes]
rs322708	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs322709	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322710	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs322717	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs322720	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs322721	0.84[ASN][1000 genomes]
rs322722	0.89[ASN][1000 genomes]
rs34620038	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35974053	0.89[ASN][1000 genomes]
rs5005738	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6777760	0.84[ASN][1000 genomes]
rs7618208	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs958737	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9872973	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1012646	chr3:25277328-25322125	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1006455	chr3:25277328-25327235	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25292200-25308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25293000-25308400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: