Variant report

Variant	rs324732
Chromosome Location	chr4:76709482-76709483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76700632..76702346-chr4:76708168..76709934,2	K562	blood:
2	chr4:76707581..76709648-chr4:76714375..76715903,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17220803	1.00[AFR][1000 genomes]
rs28453838	1.00[AFR][1000 genomes]
rs6851218	1.00[AFR][1000 genomes]
rs7669265	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1003516	chr4:76597112-76729576	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv537143	chr4:76597112-76729576	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76650800-76737800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:76652400-76725000	Weak transcription	Hela-S3	cervix
3	chr4:76671000-76739400	Weak transcription	Stomach Mucosa	stomach
4	chr4:76674800-76715200	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:76675000-76727400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:76676400-76730600	Weak transcription	Spleen	Spleen
7	chr4:76677000-76710200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:76677000-76736200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:76685800-76719200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr4:76685800-76738400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr4:76687600-76716200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:76688200-76738200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:76689400-76724000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:76691200-76713600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:76691200-76717000	Strong transcription	Placenta	Placenta
16	chr4:76691400-76715400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:76691600-76710000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:76691600-76710400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:76691800-76716800	Strong transcription	Fetal Intestine Large	intestine
20	chr4:76692000-76709800	Strong transcription	Fetal Thymus	thymus
21	chr4:76692000-76717400	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr4:76695000-76717200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:76697600-76734400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr4:76698000-76711400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr4:76698000-76711600	Weak transcription	Brain Angular Gyrus	brain
26	chr4:76698000-76721600	Weak transcription	Brain Anterior Caudate	brain
27	chr4:76698000-76735400	Weak transcription	Small Intestine	intestine
28	chr4:76698600-76711400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr4:76698800-76725000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:76699000-76725400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:76699200-76710400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:76699200-76717400	Strong transcription	Liver	Liver
33	chr4:76699200-76724000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:76699400-76711400	Weak transcription	Brain Substantia Nigra	brain
35	chr4:76699400-76722600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr4:76701200-76711400	Weak transcription	Fetal Kidney	kidney
37	chr4:76701200-76712000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:76701200-76725200	Weak transcription	Thymus	Thymus
39	chr4:76701400-76711200	Weak transcription	K562	blood
40	chr4:76701800-76721800	Weak transcription	Colonic Mucosa	Colon
41	chr4:76702000-76710400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr4:76702600-76709600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:76702600-76710600	Strong transcription	GM12878-XiMat	blood
44	chr4:76702800-76714400	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr4:76703400-76722800	Weak transcription	Psoas Muscle	Psoas
46	chr4:76704200-76711400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr4:76704200-76722400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:76704600-76711600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr4:76704800-76725200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr4:76705000-76730800	Weak transcription	Fetal Heart	heart

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