Variant report

Variant	rs325213
Chromosome Location	chr5:98184200-98184201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98171393..98172987-chr5:98182107..98184850,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10044573	1.00[AFR][1000 genomes]
rs161748	0.84[AFR][1000 genomes]
rs162340	1.00[AFR][1000 genomes]
rs162342	0.90[AFR][1000 genomes]
rs188974	1.00[AFR][1000 genomes]
rs2617516	1.00[AFR][1000 genomes]
rs330420	1.00[AFR][1000 genomes]
rs400928	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98175600-98190000	Weak transcription	HUVEC	blood vessel
2	chr5:98175800-98190600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:98180200-98213600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:98180800-98195200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:98181400-98190200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:98182400-98188400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:98182400-98189800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:98182400-98190400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:98182400-98203600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:98182600-98189800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:98182600-98190400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:98182600-98190400	Weak transcription	Placenta	Placenta
13	chr5:98182600-98190800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:98182600-98191400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:98182600-98191600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:98182600-98197200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:98182600-98205000	Weak transcription	NHEK	skin
18	chr5:98182800-98190000	Weak transcription	HMEC	breast
19	chr5:98183000-98190400	Weak transcription	A549	lung
20	chr5:98183000-98201000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:98183200-98191400	Weak transcription	Fetal Lung	lung
22	chr5:98183200-98191400	Weak transcription	HepG2	liver

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