Variant report

Variant	rs32632
Chromosome Location	chr5:14561917-14561918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10447188	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10447189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs32635	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14558800-14562000	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr5:14560400-14569400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:14560600-14576000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:14560800-14562000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr5:14560800-14562000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr5:14560800-14562200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr5:14560800-14562200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:14560800-14562400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:14561000-14562000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:14561000-14566200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr5:14561800-14562000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:14561800-14565400	Strong transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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