Variant report

Variant	rs327460
Chromosome Location	chr14:81247715-81247716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81236424..81238207-chr14:81245492..81248423,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10133034	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1038523	0.89[AMR][1000 genomes]
rs149626	0.80[AMR][1000 genomes]
rs150997	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs162171	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs162172	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs162178	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs327423	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs327424	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs327425	0.88[AMR][1000 genomes]
rs327428	0.80[AMR][1000 genomes]
rs327429	0.80[AMR][1000 genomes]
rs327435	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs327440	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs327442	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs327443	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs327446	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs327447	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs327456	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs327457	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs327459	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs327462	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs327463	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs327467	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs327469	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs327470	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs327472	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs327473	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs327476	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs328240	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs328241	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs328258	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8011273	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:81199800-81248600	Weak transcription	Primary T cells from cord blood	blood
3	chr14:81205000-81261000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:81207600-81265400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:81209600-81248200	Weak transcription	HSMM	muscle
6	chr14:81222400-81260000	Weak transcription	Fetal Brain Female	brain
7	chr14:81223200-81250800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr14:81227000-81260800	Weak transcription	NH-A	brain
9	chr14:81227400-81258000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr14:81231200-81251400	Weak transcription	A549	lung
11	chr14:81232000-81251200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:81232400-81260800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr14:81235200-81253600	Weak transcription	HMEC	breast
14	chr14:81235400-81266600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:81236600-81251200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:81237200-81248400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:81237400-81260600	Weak transcription	Right Ventricle	heart
18	chr14:81237600-81255800	Weak transcription	NHLF	lung
19	chr14:81237600-81264600	Weak transcription	Psoas Muscle	Psoas
20	chr14:81238000-81267000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr14:81238800-81251400	Weak transcription	Ovary	ovary
22	chr14:81239200-81250800	Weak transcription	Aorta	Aorta
23	chr14:81239200-81251000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:81239200-81258800	Weak transcription	Adipose Nuclei	Adipose
25	chr14:81239400-81250800	Weak transcription	Left Ventricle	heart
26	chr14:81239400-81257800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:81239400-81260200	Weak transcription	NHEK	skin
28	chr14:81240800-81260800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:81241000-81263200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr14:81242200-81261000	Weak transcription	Liver	Liver
31	chr14:81243800-81250800	Weak transcription	Thymus	Thymus
32	chr14:81243800-81251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr14:81243800-81259000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:81243800-81261200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr14:81244000-81251400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:81244400-81248000	Weak transcription	Fetal Thymus	thymus
37	chr14:81246200-81248400	Weak transcription	Dnd41	blood
38	chr14:81246200-81259000	Weak transcription	Lung	lung
39	chr14:81246800-81271600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr14:81247200-81252400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links