Variant report

Variant	rs327663
Chromosome Location	chr7:80776251-80776252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10278323	0.86[ASN][1000 genomes]
rs11976988	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12707235	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12707236	0.83[AMR][1000 genomes]
rs13231640	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17154817	0.86[ASN][1000 genomes]
rs179172	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327667	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327669	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327671	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327672	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327673	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327675	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327676	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs327724	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327726	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327727	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327728	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327729	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327730	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327731	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs327732	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs479878	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs483587	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs491746	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs496019	0.81[AFR][1000 genomes]
rs496185	0.81[AFR][1000 genomes]
rs515646	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs522649	0.81[AFR][1000 genomes]
rs523448	0.81[AFR][1000 genomes]
rs531769	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs532663	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs542368	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs547784	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs560921	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs561061	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs561914	0.81[AFR][1000 genomes]
rs565429	0.81[AFR][1000 genomes]
rs566471	0.81[AMR][1000 genomes]
rs567313	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs567339	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs571662	0.81[AMR][1000 genomes]
rs573578	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7778447	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80763200-80780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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