Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:78893702..78896583-chr3:78898373..78900723,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10511125	1.00[CHB][hapmap]
rs1349024	1.00[YRI][hapmap]
rs1374881	1.00[YRI][hapmap]
rs1374887	1.00[YRI][hapmap]
rs1386431	1.00[YRI][hapmap]
rs151258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs162817	0.90[EUR][1000 genomes]
rs162871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs162877	0.93[EUR][1000 genomes]
rs17016495	1.00[CHB][hapmap]
rs17016507	1.00[CHB][hapmap]
rs17016511	1.00[CHB][hapmap]
rs17016646	1.00[JPT][hapmap]
rs179690	0.87[EUR][1000 genomes]
rs1947154	1.00[YRI][hapmap]
rs2125123	1.00[CHB][hapmap]
rs329809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs329810	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs333478	0.87[EUR][1000 genomes]
rs333479	0.87[EUR][1000 genomes]
rs333485	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs333488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs333489	0.87[EUR][1000 genomes]
rs333497	0.87[EUR][1000 genomes]
rs333498	0.87[EUR][1000 genomes]
rs333503	0.88[EUR][1000 genomes]
rs333508	1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs3773230	1.00[CHB][hapmap]
rs404130	0.87[EUR][1000 genomes]
rs410943	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs448782	0.87[EUR][1000 genomes]
rs451056	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs452705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs6774082	1.00[YRI][hapmap]
rs9845223	1.00[JPT][hapmap]
rs9858414	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78896600-78904200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:78896600-78908400	Weak transcription	Osteobl	bone
3	chr3:78897200-78907200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:78898000-78904400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:78898200-78904200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:78898200-78905000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:78898600-78904200	Weak transcription	Fetal Lung	lung
8	chr3:78898600-78906800	Weak transcription	A549	lung
9	chr3:78899200-78906800	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:78900000-78904200	Weak transcription	HepG2	liver
11	chr3:78900200-78900800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:78900400-78900800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:78900600-78901000	Enhancers	HUES64 Cell Line	embryonic stem cell

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