Variant report

Variant	rs33052
Chromosome Location	chr3:159600089-159600090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159546081..159548652-chr3:159599760..159602729,2	MCF-7	breast:
2	chr3:159599271..159600952-chr3:159602539..159604089,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs33051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877698	chr3:159583518-159640152	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159579600-159600600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:159583000-159600600	Weak transcription	Fetal Stomach	stomach
3	chr3:159585600-159600600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:159588200-159605200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:159590800-159617600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:159591000-159600800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:159593400-159605400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:159594000-159606600	Weak transcription	Fetal Kidney	kidney
9	chr3:159595200-159600800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:159596000-159600800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:159596200-159613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:159597000-159600600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:159597000-159600600	Enhancers	Brain Substantia Nigra	brain
14	chr3:159597000-159600800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:159597000-159601600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:159597000-159601600	Enhancers	NHDF-Ad	bronchial
17	chr3:159597000-159605800	Enhancers	Brain Angular Gyrus	brain
18	chr3:159597200-159600200	Enhancers	Fetal Heart	heart
19	chr3:159597200-159600400	Enhancers	Brain Anterior Caudate	brain
20	chr3:159597200-159600400	Enhancers	Brain Cingulate Gyrus	brain
21	chr3:159597200-159600600	Enhancers	Brain Hippocampus Middle	brain
22	chr3:159597400-159601600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:159597600-159600800	Enhancers	HSMM	muscle
24	chr3:159597600-159601400	Enhancers	Left Ventricle	heart
25	chr3:159597600-159601400	Enhancers	Psoas Muscle	Psoas
26	chr3:159597800-159600600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:159598000-159600600	Weak transcription	Spleen	Spleen
28	chr3:159598200-159602000	Enhancers	HMEC	breast
29	chr3:159598400-159601600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:159598600-159601800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:159598800-159600800	Enhancers	Fetal Brain Female	brain
32	chr3:159598800-159602800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr3:159599000-159601600	Enhancers	HSMMtube	muscle
34	chr3:159599000-159601800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:159599200-159600400	Flanking Active TSS	NHEK	skin
36	chr3:159599200-159600600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:159599200-159600600	Enhancers	NH-A	brain
38	chr3:159599200-159601000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
39	chr3:159599200-159601400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:159599200-159601400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:159599200-159601600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:159599200-159601800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:159599200-159601800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr3:159599200-159603200	Enhancers	HUVEC	blood vessel
45	chr3:159599400-159600400	Enhancers	Stomach Smooth Muscle	stomach
46	chr3:159599400-159600600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:159599400-159600600	Enhancers	Brain Germinal Matrix	brain
48	chr3:159599400-159601400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:159599400-159601400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:159599400-159601400	Enhancers	Right Ventricle	heart

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