Variant report

Variant	rs331434
Chromosome Location	chr11:36487069-36487070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36484356..36487106-chr11:36488282..36491848,3	K562	blood:
2	chr11:36478697..36481136-chr11:36486249..36488109,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs331433	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs331435	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs331436	1.00[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5030411	0.89[CEU][hapmap]
rs5030487	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs566797	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs570676	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6484858	1.00[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7106522	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122638	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7128283	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7931252	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046452	chr11:36460958-36503079	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36471800-36506800	Weak transcription	Gastric	stomach
2	chr11:36471800-36506800	Weak transcription	Pancreas	Pancrea
3	chr11:36473000-36488000	Weak transcription	Liver	Liver
4	chr11:36473200-36505600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:36474800-36511000	Weak transcription	Fetal Kidney	kidney
6	chr11:36477800-36488200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:36478000-36487400	Weak transcription	Esophagus	oesophagus
8	chr11:36478000-36488400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:36478000-36488800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:36478000-36489400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:36478200-36489800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:36478200-36508800	Weak transcription	Fetal Brain Female	brain
13	chr11:36478400-36488000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:36478400-36491600	Weak transcription	Brain Angular Gyrus	brain
15	chr11:36478600-36487600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:36478600-36488800	Weak transcription	HMEC	breast
17	chr11:36478600-36490800	Weak transcription	Right Atrium	heart
18	chr11:36478600-36506400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:36478800-36487200	Weak transcription	Placenta	Placenta
20	chr11:36478800-36487400	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:36478800-36488800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:36478800-36489400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:36478800-36489400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:36478800-36491200	Weak transcription	NHDF-Ad	bronchial
25	chr11:36478800-36491600	Weak transcription	Brain Anterior Caudate	brain
26	chr11:36478800-36492200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:36478800-36505400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:36478800-36510400	Weak transcription	Right Ventricle	heart
29	chr11:36478800-36512200	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:36480600-36490800	Weak transcription	Lung	lung
31	chr11:36481800-36508600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:36482200-36487400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:36482400-36489000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:36482600-36489000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:36482800-36489600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:36482800-36491200	Weak transcription	Fetal Lung	lung
37	chr11:36484400-36489400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:36484400-36492200	Weak transcription	Aorta	Aorta
39	chr11:36484400-36506800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:36484600-36487400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:36484600-36489200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:36484800-36487600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:36484800-36487600	Enhancers	NH-A	brain
44	chr11:36484800-36491400	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:36484800-36505600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:36485000-36487400	Weak transcription	Spleen	Spleen
47	chr11:36485000-36487800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:36485000-36488400	Weak transcription	Colonic Mucosa	Colon
49	chr11:36485000-36499400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:36485400-36489400	Weak transcription	Primary T cells fromperipheralblood	blood

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