Variant report

Variant	rs332529
Chromosome Location	chr5:90789470-90789471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90783798..90785591-chr5:90786884..90789599,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10041402	0.84[EUR][1000 genomes]
rs10045280	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[EUR][1000 genomes]
rs10052492	0.87[EUR][1000 genomes]
rs10054820	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10058025	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10059163	0.84[EUR][1000 genomes]
rs10063683	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10073657	0.81[EUR][1000 genomes]
rs10073935	0.84[EUR][1000 genomes]
rs1035476	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1035477	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10474352	0.86[CHB][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10474353	0.82[EUR][1000 genomes]
rs11950530	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11959525	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12110065	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[EUR][1000 genomes]
rs12188467	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12651840	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12654787	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12655973	0.94[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs12656350	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1363839	0.94[CEU][hapmap];0.90[CHB][hapmap]
rs1477348	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1477349	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs186717	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1895448	0.94[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs1895449	0.84[EUR][1000 genomes]
rs1964292	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2004483	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2052553	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2059207	0.94[CEU][hapmap];0.91[CHB][hapmap];0.84[EUR][1000 genomes]
rs2059208	0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs2367526	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2839728	0.94[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes]
rs2887007	0.80[EUR][1000 genomes]
rs332531	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs332544	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4382199	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60513756	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6452953	0.94[CEU][hapmap];0.91[CHB][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs6452954	0.84[EUR][1000 genomes]
rs66759971	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6860948	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6865495	0.83[EUR][1000 genomes]
rs6866191	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6866923	0.94[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes]
rs6867091	0.84[EUR][1000 genomes]
rs6869717	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6882269	0.81[EUR][1000 genomes]
rs746637	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs7708782	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7715402	0.94[CEU][hapmap];0.91[CHB][hapmap]
rs7718871	0.94[CEU][hapmap];0.91[CHB][hapmap]
rs7720132	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs889213	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs9293568	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9686361	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs985434	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1030453	chr5:90709080-90849693	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3414088	chr5:90744553-90861592	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90787600-90790400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:90789200-90790200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:90789200-90790200	Weak transcription	GM12878-XiMat	blood
4	chr5:90789200-90790600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr5:90789200-90790800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:90789200-90801400	Weak transcription	Aorta	Aorta

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