Variant report

Variant	rs333145
Chromosome Location	chr1:61681855-61681856
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61681255..61681914-chr1:61963857..61964457,3	MCF-7	breast:
2	chr1:61676278..61681028-chr1:61681460..61685065,4	K562	blood:
3	chr1:61681397..61683015-chr1:62107574..62109680,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs162878	0.89[CEU][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];1.00[MKK][hapmap];0.87[AMR][1000 genomes]
rs167987	0.89[CEU][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes]
rs17121858	0.87[MKK][hapmap]
rs1977653	0.81[EUR][1000 genomes]
rs2275208	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs333136	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333137	0.99[ASN][1000 genomes]
rs333138	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs333140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333141	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs333144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333146	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.99[ASN][1000 genomes]
rs333147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs333150	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs333160	0.89[CEU][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs333161	0.89[CEU][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs333162	0.89[CEU][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs333164	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs333165	0.89[CEU][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs333166	0.89[CEU][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs334690	0.92[JPT][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4244151	1.00[CEU][hapmap];0.92[JPT][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6684051	1.00[CEU][hapmap]
rs72664877	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72664888	0.83[EUR][1000 genomes]
rs72664890	0.83[EUR][1000 genomes]
rs72664891	0.83[EUR][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61665000-61683800	Weak transcription	Brain Germinal Matrix	brain
2	chr1:61669200-61685800	Weak transcription	Fetal Brain Female	brain
3	chr1:61669200-61692400	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:61669400-61683800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:61669400-61691800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:61669600-61685800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:61669600-61686000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:61669600-61692400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:61671200-61683200	Weak transcription	K562	blood
10	chr1:61674200-61686200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:61674800-61683800	Weak transcription	Psoas Muscle	Psoas
12	chr1:61674800-61685000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:61676600-61685800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:61676600-61690000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:61677600-61692400	Weak transcription	Esophagus	oesophagus
16	chr1:61677800-61685600	Weak transcription	Fetal Stomach	stomach
17	chr1:61678400-61682000	Enhancers	Adipose Nuclei	Adipose
18	chr1:61678600-61682000	Enhancers	Fetal Heart	heart
19	chr1:61679200-61692200	Weak transcription	NHEK	skin
20	chr1:61679600-61682200	Enhancers	HepG2	liver
21	chr1:61679600-61684400	Enhancers	Liver	Liver
22	chr1:61679600-61685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:61679800-61683800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:61679800-61687400	Weak transcription	Fetal Brain Male	brain
25	chr1:61680000-61720200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr1:61680800-61687400	Weak transcription	A549	lung
27	chr1:61681200-61683000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:61681400-61682000	Enhancers	Aorta	Aorta
29	chr1:61681400-61682000	Enhancers	Brain Anterior Caudate	brain
30	chr1:61681400-61682000	Enhancers	Brain Hippocampus Middle	brain
31	chr1:61681400-61682000	Enhancers	Colon Smooth Muscle	Colon
32	chr1:61681400-61682000	Enhancers	Gastric	stomach
33	chr1:61681400-61682000	Enhancers	Left Ventricle	heart
34	chr1:61681400-61682000	Enhancers	Ovary	ovary
35	chr1:61681400-61682000	Enhancers	Rectal Smooth Muscle	rectum
36	chr1:61681400-61682000	Enhancers	Right Ventricle	heart
37	chr1:61681400-61682000	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr1:61681400-61682200	Enhancers	Stomach Smooth Muscle	stomach
39	chr1:61681400-61682600	Enhancers	Pancreas	Pancrea
40	chr1:61681400-61682600	Enhancers	Right Atrium	heart
41	chr1:61681600-61682000	Enhancers	Fetal Kidney	kidney
42	chr1:61681600-61682000	Enhancers	Fetal Lung	lung
43	chr1:61681800-61683200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr1:61681800-61686000	Weak transcription	Brain Substantia Nigra	brain

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