Variant report

Variant	rs334034
Chromosome Location	chr2:179088779-179088780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:179081675..179083838-chr2:179087556..179089889,2	MCF-7	breast:
2	chr2:179087693..179089366-chr2:179091753..179093741,2	K562	blood:
3	chr2:179082696..179084962-chr2:179087856..179090236,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs334026	0.90[YRI][hapmap]
rs334031	1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1011423	chr2:179084407-179166160	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179077200-179089600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:179078600-179091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:179079000-179101200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:179084400-179089200	Weak transcription	HSMM	muscle
5	chr2:179084600-179094800	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:179085800-179090600	Weak transcription	Aorta	Aorta
7	chr2:179086800-179089400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:179086800-179091800	Weak transcription	HMEC	breast
9	chr2:179087800-179090600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:179088000-179091000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:179088000-179091000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:179088200-179088800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:179088200-179088800	Enhancers	Fetal Brain Female	brain
14	chr2:179088200-179089000	Enhancers	Brain Anterior Caudate	brain
15	chr2:179088200-179090000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:179088400-179088800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:179088400-179089000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr2:179088400-179089400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr2:179088600-179088800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:179088600-179089000	Enhancers	Fetal Brain Male	brain
21	chr2:179088600-179089000	Enhancers	Pancreas	Pancrea
22	chr2:179088600-179089600	Enhancers	Psoas Muscle	Psoas
23	chr2:179088600-179090400	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links