Variant report

Variant	rs334036
Chromosome Location	chr2:179091478-179091479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:179085335..179088207-chr2:179090223..179091737,2	K562	blood:
2	chr2:179048964..179050536-chr2:179089183..179092012,2	K562	blood:
3	chr2:179090398..179094445-chr2:179099557..179102504,4	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17695665	0.82[CEU][hapmap]
rs334025	0.82[CEU][hapmap]
rs334032	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6731799	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1011423	chr2:179084407-179166160	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179078600-179091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:179079000-179101200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:179084600-179094800	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:179086800-179091800	Weak transcription	HMEC	breast
5	chr2:179088800-179095800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:179089000-179092400	Enhancers	NH-A	brain
7	chr2:179089200-179092600	Enhancers	HSMM	muscle
8	chr2:179090200-179091800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:179090200-179091800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:179090200-179094200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:179090400-179091600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:179090400-179091800	Weak transcription	Osteobl	bone
13	chr2:179090400-179092200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:179090600-179094200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:179090800-179091800	Weak transcription	HUVEC	blood vessel
16	chr2:179090800-179095800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:179091000-179106400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr2:179091200-179092600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:179091200-179101200	Weak transcription	Psoas Muscle	Psoas
20	chr2:179091200-179115000	Weak transcription	Aorta	Aorta

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