Variant report

Variant	rs334053
Chromosome Location	chr2:179018548-179018549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10497475	0.82[ASN][1000 genomes]
rs12994312	0.90[ASN][1000 genomes]
rs12996084	0.90[ASN][1000 genomes]
rs12997449	0.90[ASN][1000 genomes]
rs13022619	0.90[ASN][1000 genomes]
rs13030533	0.90[ASN][1000 genomes]
rs16866108	0.82[ASN][1000 genomes]
rs16866148	0.90[ASN][1000 genomes]
rs17695382	0.90[ASN][1000 genomes]
rs17695415	0.90[ASN][1000 genomes]
rs334120	0.83[EUR][1000 genomes]
rs35211706	0.90[ASN][1000 genomes]
rs35994691	0.90[ASN][1000 genomes]
rs66558684	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179016200-179019200	Enhancers	Fetal Intestine Large	intestine
2	chr2:179016400-179018600	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr2:179016800-179018600	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:179016800-179019400	Enhancers	Fetal Intestine Small	intestine
5	chr2:179018200-179018600	Flanking Active TSS	Liver	Liver
6	chr2:179018400-179018600	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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