Variant report

Variant	rs334707
Chromosome Location	chr1:61615536-61615537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10493302	0.85[YRI][hapmap]
rs334708	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334711	0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs334717	0.80[EUR][1000 genomes]
rs334720	0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs334722	0.80[EUR][1000 genomes]
rs384893	0.81[CHB][hapmap];0.85[YRI][hapmap]
rs4430360	0.86[YRI][hapmap]
rs6670604	0.81[YRI][hapmap]
rs9436630	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008634	chr1:61613785-61671468	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61600000-61617200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:61605400-61617200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:61606000-61649000	Weak transcription	Spleen	Spleen
4	chr1:61606400-61616600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:61607400-61615800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:61607600-61617000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr1:61607600-61617800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:61607600-61622200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:61607800-61615600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:61607800-61616000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:61607800-61616400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:61607800-61616600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:61607800-61617200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:61607800-61617800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:61607800-61618000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr1:61607800-61622600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:61608400-61617000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr1:61608400-61617200	Weak transcription	Fetal Stomach	stomach
19	chr1:61608600-61617800	Weak transcription	Adipose Nuclei	Adipose
20	chr1:61609200-61617200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:61609200-61617400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:61609600-61622800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:61610000-61615800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:61610000-61621800	Weak transcription	Fetal Brain Male	brain
25	chr1:61610000-61623400	Weak transcription	Fetal Brain Female	brain
26	chr1:61610200-61617200	Weak transcription	Pancreas	Pancrea
27	chr1:61610200-61622200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:61610200-61623200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:61610400-61615800	Weak transcription	Esophagus	oesophagus
30	chr1:61610400-61616600	Weak transcription	Brain Germinal Matrix	brain
31	chr1:61612000-61635800	Weak transcription	Lung	lung
32	chr1:61612400-61617200	Weak transcription	Fetal Muscle Leg	muscle
33	chr1:61612800-61626200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr1:61613400-61616000	Enhancers	Right Atrium	heart
35	chr1:61613400-61619800	Enhancers	Colon Smooth Muscle	Colon
36	chr1:61613600-61615600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr1:61613600-61617400	Enhancers	A549	lung
38	chr1:61613800-61615600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:61613800-61615800	Enhancers	K562	blood
40	chr1:61613800-61616000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr1:61613800-61620600	Enhancers	Brain Hippocampus Middle	brain
42	chr1:61614000-61615800	Enhancers	NHEK	skin
43	chr1:61614000-61616000	Enhancers	Aorta	Aorta
44	chr1:61614200-61617200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr1:61614200-61617400	Weak transcription	Colonic Mucosa	Colon
46	chr1:61614400-61615600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:61614400-61616000	Enhancers	HepG2	liver
48	chr1:61614400-61617400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr1:61614600-61615800	Enhancers	Placenta	Placenta
50	chr1:61614600-61616600	Weak transcription	Liver	Liver

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