Variant report

Variant	rs33533
Chromosome Location	chr3:42415470-42415471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs33474	0.81[ASN][1000 genomes]
rs33475	0.82[ASN][1000 genomes]
rs33478	0.82[ASN][1000 genomes]
rs33479	0.97[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs33532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs39648	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529987	chr3:41921995-42591771	Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1009125	chr3:41953873-42472253	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv536549	chr3:41953873-42472253	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1005533	chr3:41953873-42596375	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42411400-42416200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:42411400-42420600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:42411600-42419800	Weak transcription	Brain Germinal Matrix	brain
4	chr3:42412800-42416200	Weak transcription	Placenta	Placenta
5	chr3:42413600-42417200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:42414200-42416000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:42414200-42416200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:42414400-42416200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:42414400-42416800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:42414600-42415800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:42414800-42416000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:42415200-42417000	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:42415400-42416000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links